Yo Yehudi yochannah

CORS investigation notes

Repo used for testing: https://github.com/yochannah/cytoscape-intermine/tree/cors-investigations - cors investigation branch.

To test:

Clone the repo and checkout cors-investigations branch
npm install dependencies.
npm install ../some/path/to/locally/compiled/imjs
In the cytoscape-intermine/node_moduled/imjs directory change main : build/service to main : dist/im.js if needed.

This will produce a 400 error in the current (June 2019) InterMineR version.

library(InterMineR)

# Begin by initialising against an InterMine - in this case HumanMine
im <- initInterMine(mine=listMines()["HumanMine"], "SOME TOP SECRET TOKEN")

# initialise a variable to hold a new query
expressedPancreas = newQuery()

Instructions

Export JSON from the GSoC dashbaord. When signed in as an org admin, for 2019, it's this URL: https://summerofcode.withgoogle.com/api/om/program/2019/proposal/?ignored=false&is_complete=true&order=title_lower&page=1&page_size=50&shared_with_org_members=true

Paste it into the script.js file.

To run the script, navigate to the directory where the script is stored, e.g.

project	interest level
imjs	🔥🔥🔥
data viz	🔥🔥
spring migration	🔥🔥🔥
data modeller	🔥🔥🔥🔥
cloud	🔥🔥
InterMineR	🔥🔥🔥
link validation	🔥
similarity	🔥

FOSDEM - next conf in 2020 - Brussels
Mozilla Festival - Late October 2019 - London, UK
Various PyCons - all around the world at various dates
Opencons around the world check again in a month or two for dates
Git Merge europe - next one will be 2020

Ones I know a little less about:

Linux Foundation Events

Testing.

rgba(255,255,255,0.4) /* 40% opaque white */

rgba(255,255,0,0.7) /* 70% opaque yellow */

	#load InterMineR
	library(InterMineR)

	# Select WormMine
	wormMine <- listMines()["WormMine"]
	im <- initInterMine(mine=wormMine) # IMPORTANT: ADD YOUR TOKEN HERE IF THIS IS A LIST YOU SAVE TO YOUR OWN ACCOUNT
	# EXAMPLE: im <- initInterMine(mine=wormMine, "YOUR TOKEN")

	# fetch the list of widgets available from WormMine
	widgets <- getWidgets(im)

	<!doctype html>
	<html>
	<head>
	<meta name="description" content="Sample imjs query">
	<script src="https://cdn.jsdelivr.net/npm/imjs@3.16.0/dist/im.js"></script>
	</head>
	<body>

	<script>
	var intermine = new imjs.Service({root: 'http://www.flymine.org/flymine/service/'});

	var templates = {
	"templates": {
	"ChromRegion_Genes": {
	"model": {
	"name": "genomic"
	},
	"title": "Region --> Genes",
	"description": "Show the genes located between two points on a chromosome. [Keywords: span, region, co-ordinates]",
	"select": ["Chromosome.primaryIdentifier", "Chromosome.locatedFeatures.feature.primaryIdentifier", "Chromosome.locatedFeatures.feature.symbol", "Chromosome.locatedFeatures.feature.chromosomeLocation.start", "Chromosome.locatedFeatures.feature.chromosomeLocation.end", "Chromosome.locatedFeatures.feature.chromosomeLocation.strand"],
	"constraintLogic": "A and B and C and E",

	```json
	//json in here
	```