| ###### code to run on RStudio cloud project | |
| pkg_cran <- c("reprex", "tidyverse", "sf", "tidycensus", "viridis", "knitr", | |
| "gapminder", "forcats", "broom", "wordcloud", "tidytext", "rebird", | |
| "geonames", "modelr", "rsample", "magrittr", "ISLR", "titanic", | |
| "microbenchmark", "partykit", "caret", "nycflights13", "ggplot2", | |
| "tibble", "harrypotter", "ggwordcloud", "here", "arrow", "readxl", | |
| "haven", "ggmap", "rnaturalearth", "rtweet", "leaflet", "stringr", | |
| "widgetframe", "RColorBrewer", "patchwork", "ymlthis", "RSocrata", | |
| "dplyr", "shiny", "httr", "repurrrsive", "purrr", "acs", "downloader", | |
| "statebins", "rsparkling", "sparklyr", "h2o", "dbplyr", "bigrquery", |
| #!/bin/env python | |
| import fileinput | |
| idx = 1 | |
| samples = [] | |
| for line in fileinput.input(): | |
| if line.startswith("##"): | |
| continue | |
| if line.startswith("#CHROM"): |
These notes build from several excellent sources:
and assume you're working with GATK 2.2-16. These notes also assume