icaoberg

#!/bin/bash
#SBATCH --job-name=blast_demo
#SBATCH --output=blast_%j.out
#SBATCH --error=blast_%j.err
#SBATCH --time=02:00:00
#SBATCH -n 8
#SBATCH --mem=16000M
#SBATCH -p RM-shared

###############################################################################

icaoberg

#!/bin/bash

# Enable nullglob so patterns that don't match anything expand to null
shopt -s nullglob

# Check if a file name is provided as an argument
if [ -z "$1" ]; then
    echo "Error: No file specified. Please provide a file name as an argument."
    exit 1
fi

icaoberg

import os
import asana
from pathlib import Path
from tqdm import tqdm
import pandas as pd

import warnings
warnings.filterwarnings("ignore")

# This script fetches tasks from Asana and displays the top 10 incomplete tasks with due dates.

icaoberg

#!/bin/bash

# Alias: sq
# This alias is a shorthand for a customized display of job information using the 'squeue' command.

# Command:
# squeue -o "%.18i %.9P %.50j %.8u %.2t %.10M %.6D %R"

# Description of the 'squeue' options:
# - 'squeue': A command used to view information about jobs in the Slurm workload manager.

icaoberg

for F in *.mp3
do
  ALBUM='Room Service (Extended Version)'
  ARTIST='Roxette'
  SONG=$(basename $F .mp3 | cut -d'-' -f2-25 | xargs -0)
  GENRE='Pop'
  YEAR=2020
  mid3v2 -a "$ARTIST" -A "$ALBUM" -t "$SONG" -g $GENRE -y $YEAR $F
done

icaoberg

singularity-PACKAGE

Singularity recipe for PACKAGE.

Installing the container on Bridges 2

Copy the

• SIF file
• and the PACKAGE script

to /opt/packages/PACKAGE/VERSION.

icaoberg

Bootstrap: docker
From: debian:latest

%labels
    AUTHOR icaoberg
    MAINTAINER icaoberg@psc.edu
    WEBSITE https://www.andrew.cmu.edu/~icaoberg
    VERSION 0.5.0

%post

icaoberg

Bootstrap: docker
From: alpine:edge

%labels
    AUTHOR icaoberg
    MAINTAINER icaoberg@psc.edu
    WEBSITE https://www.andrew.cmu.edu/~icaoberg
    VERSION 12.1.2

%post

icaoberg

Bootstrap: docker
From: alpine:edge

%labels
    AUTHOR icaoberg
    MAINTAINER icaoberg@psc.edu
    WEBSITE https://www.andrew.cmu.edu/~icaoberg
    VERSION 1.11.0

%post

icaoberg

#!/bin/bash

module keywords "Biological Sciences"