hemera@HZDR: Install openPMD to run PIConGPU

install_openPMD.sh

#!/usr/bin/env bash
#
# Authors: Axel Huebl, Marco Garten, Klaus Steiniger, Finn-Ole Carstens
#
# last updated: 2021-11-10
# 
# Based on https://gist.github.com/steindev/86df43bef49586e2b33d2fb0a372f09c

# It is advisable to compile libraries on an interactive node
# > srun -p gpu2-interactive --gres=gpu:0 --ntasks=1 --pty --mem=8G -t 2:00:00 bash  # get resources on a node
# > ./install_PIConGPU_0.6.0-dev_dependencies_taurus.sh | tee lib_inst.out 2>lib_inst.err  # compile libraries

PIC_BRANCH="dev"

# get PIConGPU profile
if [ ! -f "$PIC_PROFILE" ]; then
    export PIC_PROFILE_NAME="$HOME/k80_picongpu.profile"
    wget -O $PIC_PROFILE_NAME \
        https://raw.githubusercontent.com/ComputationalRadiationPhysics/picongpu/dev/etc/picongpu/taurus-tud/k80_picongpu.profile.example
    # load modules
    source "$PIC_PROFILE_NAME"
else
    source "$PIC_PROFILE"
fi

set -euf -o pipefail

# create temporary directory for software source files
export SOURCE_DIR="$HOME/lib_temp"
mkdir -p $SOURCE_DIR


#   openPMD-api
if [ ! -d "$OPENPMD_ROOT" ]; then
    echo "Installing openPMD-api..."
    cd $SOURCE_DIR
    git clone -b 0.14.3 https://github.com/openPMD/openPMD-api.git \
        $SOURCE_DIR/openpmd-api
    mkdir $SOURCE_DIR/openpmd-api-build
    cd $SOURCE_DIR/openpmd-api-build
    cmake $SOURCE_DIR/openpmd-api \
        -DBUILD_EXAMPLES=OFF -DBUILD_TESTING=OFF \
        -DopenPMD_USE_ADIOS2=ON \
        -DopenPMD_USE_HDF5=ON \
        -DopenPMD_USE_PYTHON=ON \
        -DHDF5_BUILD_CPP_LIB=OFF -DHDF5_ENABLE_PARALLEL=ON \
        -DCMAKE_INSTALL_PREFIX="$OPENPMD_ROOT"
    make install
fi

cd $HOME

# message to user
echo ''
echo 'edit user & email within picongpu.profile, e.g. via:'
echo '    vim $PIC_PROFILE'
echo 'delete temporary folder for library compilation'
printf "    rm -rf %s\n" $SOURCE_DIR