Information on how to configure a new (empty) gh-pages branch and publish a quarto document there.
From: https://quarto.org/docs/publishing/github-pages.html#source-branch
Before attempting to publish you should ensure that the Source branch for your repository is gh-pages and that the site directory is set to the repository root (/).
If you do not already have a gh-pages branch, you can create one as follows:
| # This script shows how to filter and/or download a resource from the CA Open | |
| # Data Portal (https://data.ca.gov/) as a csv file using a persistent link | |
| # (i.e., a link that doesn't change based on the resource's filename) | |
| # load packages ----------------------------------------------------------- | |
| library(tidyverse) | |
| # load packages ----------------------------------------------------------- | |
| library(arrow) | |
| library(dplyr) | |
| library(glue) | |
| library(zip) | |
| library(tools) | |
| # download parquet file --------------------------------------------------- |
| # This example shows one way to access subsets of CEDEN data via the California Open Data Portal API (it's not | |
| # necessarily the only or best way though) - if you find any problems or have questions, please contact: david.altare@waterboards.ca.gov | |
| # This example applies to the following CEDEN datasets, which have been split into separate | |
| # resources by year (due to file size limitations) | |
| # Water Chemistry: https://data.ca.gov/dataset/surface-water-chemistry-results | |
| # Habitat: https://data.ca.gov/dataset/surface-water-habitat-results | |
| # Tissue: https://data.ca.gov/dataset/surface-water-aquatic-organism-tissue-sample-results | |
| # It assumes that you have your own API key saved in a system environment variable |
| # This example shows one way to access subsets of CEDEN data via the California open data portal API (it's not | |
| # necessarily the only or best way though) - if you find any problems or have questions, please contact: david.altare@waterboards.ca.gov | |
| # This example applies to the following CEDEN datasets on the open data portal: | |
| # Toxicity: https://data.ca.gov/dataset/surface-water-toxicity-results/resource/bd484e9b-426a-4ba6-ba4d-f5f8ce095836 | |
| # Benthic Macroinvertebrates: https://data.ca.gov/dataset/surface-water-benthic-macroinvertebrate-results/resource/3dfee140-47d5-4e29-99ae-16b9b12a404f | |
| # (NOTE: other CEDEN datasets are split by year, and cannont be queried across multiple years using this method -- for other CEDEN datasets, see: https://gist.github.com/daltare/2de1517ad1e315c4b1cad01278de96dd) | |
| # This example assumes that you have your own API key saved in a system environment variable | |
| # named: "data_portal_key" (to obtain an API key, create an account at data.ca.gov, then go to your |
| # This example shows how to work with CEDEN data in the Apache parquet file format, using the arrow package in R | |
| # The data (in parquet file format) for each type of CEDEN data is available on the California Open Data Portal at the | |
| # following links: | |
| # Water Chemistry: https://data.ca.gov/dataset/surface-water-chemistry-results/resource/f4aa224d-4a59-403d-aad8-187955aa2e38 | |
| # Habitat: https://data.ca.gov/dataset/surface-water-habitat-results/resource/0184c4d0-1e1d-4a33-92ad-e967b5491274 | |
| # Tissue: https://data.ca.gov/dataset/surface-water-aquatic-organism-tissue-sample-results/resource/dea5e450-4196-4a8a-afbb-e5eb89119516 | |
| # Toxicity: https://data.ca.gov/dataset/surface-water-toxicity-results/resource/a6c91662-d324-43c2-8166-a94dddd22982 | |
| # Benthic Macroinvertebrates: https://data.ca.gov/dataset/surface-water-benthic-macroinvertebrate-results/resource/eb61f9a1-b1c6-4840-99c7-420a2c494a43 | |
| # load packages |
| # data for multiple years is available at: https://www.waterboards.ca.gov/drinking_water/certlic/drinkingwater/ear.html | |
| # this script downloads data for one year to a temporary file, and loads the data into an R data frame | |
| # load R packages | |
| library(dplyr) | |
| library(readr) | |
| # create link to the dataset | |
| year <- 2018 | |
| dataset_link <- paste0('https://www.waterboards.ca.gov/drinking_water/certlic/drinkingwater/documents/ear/earsurveyresults_', |