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Index of datasets available via the Curated Microarray Database
Raw
cumida.json
[
{
"type":"Pancreatic",
"gse":"16515",
"gse_url":"https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE16515",
"platform":"570",
"gpl_url":"/data/cumida/Genes/GSEsBruno/GPLs/GPL570_limpo.txt.gz",
"samples":51,
"genes":54676,
"classes":2,
"downloads":{
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"tab":"/data/cumida/Genes/Pancreatic/GSE16515/Pancreatic_GSE16515.tab",
"csv":"/data/cumida/Genes/Pancreatic/GSE16515/Pancreatic_GSE16515.csv",
"gct":"/data/cumida/Genes/Pancreatic/GSE16515/Pancreatic_GSE16515.gct",
"cls":"/data/cumida/Genes/Pancreatic/GSE16515/Pancreatic_GSE16515.cls"
},
"images":{
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"tsne":"/data/cumida/Genes/Pancreatic/GSE16515/Pancreatic_GSE16515tSNE2d.svg"
},
"scores":{
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"dt":0.78,
"nb":0.84,
"rf":0.82,
"hc":0.69,
"knn":0.76,
"kmeans":0.76
},
"scores_url":{
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"mlp":"/data/cumida/Genes/Pancreatic/GSE16515/Pancreatic_GSE16515.arff-mlp-saida.txt",
"dt":"/data/cumida/Genes/Pancreatic/GSE16515/Pancreatic_GSE16515.arff-decisiontree_C4.5-saida.txt",
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"rf":"/data/cumida/Genes/Pancreatic/GSE16515/Pancreatic_GSE16515.arff-RandomForest-saida.txt",
"hc":"/data/cumida/Genes/Pancreatic/GSE16515/Pancreatic_GSE16515.arff-HierarchicalCluster-saida.txt",
"knn":"/data/cumida/Genes/Pancreatic/GSE16515/Pancreatic_GSE16515.arff-knn-saida.txt",
"kmeans":"/data/cumida/Genes/Pancreatic/GSE16515/Pancreatic_GSE16515.arff-k-means-saida.txt"
},
"manufacturer":"Affymetrix"
},
{
"type":"Breast",
"gse":"33447",
"gse_url":"https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE33447",
"platform":"14550",
"gpl_url":"/data/cumida/Genes/GSEsBruno/GPLs/GPL14550_limpo.txt.gz",
"samples":16,
"genes":36623,
"classes":2,
"downloads":{
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"csv":"/data/cumida/Genes/Breast/GSE33447/Breast_GSE33447.csv",
"gct":"/data/cumida/Genes/Breast/GSE33447/Breast_GSE33447.gct",
"cls":"/data/cumida/Genes/Breast/GSE33447/Breast_GSE33447.cls"
},
"images":{
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"tsne":"/data/cumida/Genes/Breast/GSE33447/Breast_GSE33447tSNE2d.svg"
},
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},
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"dt":"/data/cumida/Genes/Breast/GSE33447/Breast_GSE33447.arff-decisiontree_C4.5-saida.txt",
"nb":"/data/cumida/Genes/Breast/GSE33447/Breast_GSE33447.arff-naivebayes-saida.txt",
"rf":"/data/cumida/Genes/Breast/GSE33447/Breast_GSE33447.arff-RandomForest-saida.txt",
"hc":"/data/cumida/Genes/Breast/GSE33447/Breast_GSE33447.arff-HierarchicalCluster-saida.txt",
"knn":"/data/cumida/Genes/Breast/GSE33447/Breast_GSE33447.arff-knn-saida.txt",
"kmeans":"/data/cumida/Genes/Breast/GSE33447/Breast_GSE33447.arff-k-means-saida.txt"
},
"manufacturer":"Agilent Technologies"
},
{
"type":"Breast",
"gse":"59246",
"gse_url":"https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE59246",
"platform":"13607",
"gpl_url":"/data/cumida/Genes/GSEsBruno/GPLs/GPL13607_limpo.txt.gz",
"samples":101,
"genes":36623,
"classes":2,
"downloads":{
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"tab":"/data/cumida/Genes/Breast/GSE59246/Breast_GSE59246.tab",
"csv":"/data/cumida/Genes/Breast/GSE59246/Breast_GSE59246.csv",
"gct":"/data/cumida/Genes/Breast/GSE59246/Breast_GSE59246.gct",
"cls":"/data/cumida/Genes/Breast/GSE59246/Breast_GSE59246.cls"
},
"images":{
"pca":"/data/cumida/Genes/Breast/GSE59246/Breast_GSE59246PCA2d.svg",
"tsne":"/data/cumida/Genes/Breast/GSE59246/Breast_GSE59246tSNE2d.svg"
},
"scores":{
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"kmeans":0.62
},
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"mlp":"/data/cumida/Genes/Breast/GSE59246/Breast_GSE59246.arff-mlp-saida.txt",
"dt":"/data/cumida/Genes/Breast/GSE59246/Breast_GSE59246.arff-decisiontree_C4.5-saida.txt",
"nb":"/data/cumida/Genes/Breast/GSE59246/Breast_GSE59246.arff-naivebayes-saida.txt",
"rf":"/data/cumida/Genes/Breast/GSE59246/Breast_GSE59246.arff-RandomForest-saida.txt",
"hc":"/data/cumida/Genes/Breast/GSE59246/Breast_GSE59246.arff-HierarchicalCluster-saida.txt",
"knn":"/data/cumida/Genes/Breast/GSE59246/Breast_GSE59246.arff-knn-saida.txt",
"kmeans":"/data/cumida/Genes/Breast/GSE59246/Breast_GSE59246.arff-k-means-saida.txt"
},
"manufacturer":"Agilent Technologies"
},
{
"type":"Breast",
"gse":"26910",
"gse_url":"https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE26910",
"platform":"570",
"gpl_url":"/data/cumida/Genes/GSEsBruno/GPLs/GPL570_limpo.txt.gz",
"samples":12,
"genes":54676,
"classes":2,
"downloads":{
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"tab":"/data/cumida/Genes/Breast/GSE26910/Breast_GSE26910.tab",
"csv":"/data/cumida/Genes/Breast/GSE26910/Breast_GSE26910.csv",
"gct":"/data/cumida/Genes/Breast/GSE26910/Breast_GSE26910.gct",
"cls":"/data/cumida/Genes/Breast/GSE26910/Breast_GSE26910.cls"
},
"images":{
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"tsne":"/data/cumida/Genes/Breast/GSE26910/Breast_GSE26910tSNE2d.svg"
},
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},
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"knn":"/data/cumida/Genes/Breast/GSE26910/Breast_GSE26910.arff-knn-saida.txt",
"kmeans":"/data/cumida/Genes/Breast/GSE26910/Breast_GSE26910.arff-k-means-saida.txt"
},
"manufacturer":"Affymetrix"
},
{
"type":"Breast",
"gse":"57297",
"gse_url":"https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE57297",
"platform":"17077",
"gpl_url":"/data/cumida/Genes/GSEsBruno/GPLs/GPL17077_limpo.txt.gz",
"samples":26,
"genes":42946,
"classes":2,
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"csv":"/data/cumida/Genes/Breast/GSE57297/Breast_GSE57297.csv",
"gct":"/data/cumida/Genes/Breast/GSE57297/Breast_GSE57297.gct",
"cls":"/data/cumida/Genes/Breast/GSE57297/Breast_GSE57297.cls"
},
"images":{
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"tsne":"/data/cumida/Genes/Breast/GSE57297/Breast_GSE57297tSNE2d.svg"
},
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"nb":0.77,
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"hc":0.69,
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},
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"rf":"/data/cumida/Genes/Breast/GSE57297/Breast_GSE57297.arff-RandomForest-saida.txt",
"hc":"/data/cumida/Genes/Breast/GSE57297/Breast_GSE57297.arff-HierarchicalCluster-saida.txt",
"knn":"/data/cumida/Genes/Breast/GSE57297/Breast_GSE57297.arff-knn-saida.txt",
"kmeans":"/data/cumida/Genes/Breast/GSE57297/Breast_GSE57297.arff-k-means-saida.txt"
},
"manufacturer":"Agilent Technologies"
},
{
"type":"Breast",
"gse":"22820",
"gse_url":"https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE22820",
"platform":"6480",
"gpl_url":"/data/cumida/Genes/GSEsBruno/GPLs/GPL6480_limpo.txt.gz",
"samples":139,
"genes":33580,
"classes":2,
"downloads":{
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"tab":"/data/cumida/Genes/Breast/GSE22820/Breast_GSE22820.tab",
"csv":"/data/cumida/Genes/Breast/GSE22820/Breast_GSE22820.csv",
"gct":"/data/cumida/Genes/Breast/GSE22820/Breast_GSE22820.gct",
"cls":"/data/cumida/Genes/Breast/GSE22820/Breast_GSE22820.cls"
},
"images":{
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"tsne":"/data/cumida/Genes/Breast/GSE22820/Breast_GSE22820tSNE2d.svg"
},
"scores":{
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"knn":"/data/cumida/Genes/Breast/GSE22820/Breast_GSE22820.arff-knn-saida.txt",
"kmeans":"/data/cumida/Genes/Breast/GSE22820/Breast_GSE22820.arff-k-means-saida.txt"
},
"manufacturer":"Agilent Technologies"
},
{
"type":"Breast",
"gse":"42568",
"gse_url":"https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE42568",
"platform":"570",
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"samples":116,
"genes":54676,
"classes":2,
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"cls":"/data/cumida/Genes/Breast/GSE42568/Breast_GSE42568.cls"
},
"images":{
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"tsne":"/data/cumida/Genes/Breast/GSE42568/Breast_GSE42568tSNE2d.svg"
},
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"mlp":"/data/cumida/Genes/Breast/GSE42568/Breast_GSE42568.arff-mlp-saida.txt",
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"hc":"/data/cumida/Genes/Breast/GSE42568/Breast_GSE42568.arff-HierarchicalCluster-saida.txt",
"knn":"/data/cumida/Genes/Breast/GSE42568/Breast_GSE42568.arff-knn-saida.txt",
"kmeans":"/data/cumida/Genes/Breast/GSE42568/Breast_GSE42568.arff-k-means-saida.txt"
},
"manufacturer":"Affymetrix"
},
{
"type":"Breast",
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"gse_url":"https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE26304",
"platform":"6848",
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"samples":115,
"genes":33638,
"classes":5,
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"cls":"/data/cumida/Genes/Breast/GSE26304/Breast_GSE26304.cls"
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"hc":"/data/cumida/Genes/Breast/GSE26304/Breast_GSE26304.arff-HierarchicalCluster-saida.txt",
"knn":"/data/cumida/Genes/Breast/GSE26304/Breast_GSE26304.arff-knn-saida.txt",
"kmeans":"/data/cumida/Genes/Breast/GSE26304/Breast_GSE26304.arff-k-means-saida.txt"
},
"manufacturer":"Agilent Technologies"
},
{
"type":"Breast",
"gse":"70947",
"gse_url":"https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE70947",
"platform":"13607",
"gpl_url":"/data/cumida/Genes/GSEsBruno/GPLs/GPL13607_limpo.txt.gz",
"samples":289,
"genes":35982,
"classes":2,
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"csv":"/data/cumida/Genes/Breast/GSE70947/Breast_GSE70947.csv",
"gct":"/data/cumida/Genes/Breast/GSE70947/Breast_GSE70947.gct",
"cls":"/data/cumida/Genes/Breast/GSE70947/Breast_GSE70947.cls"
},
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"tsne":"/data/cumida/Genes/Breast/GSE70947/Breast_GSE70947tSNE2d.svg"
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"rf":"/data/cumida/Genes/Breast/GSE70947/Breast_GSE70947.arff-RandomForest-saida.txt",
"hc":"/data/cumida/Genes/Breast/GSE70947/Breast_GSE70947.arff-HierarchicalCluster-saida.txt",
"knn":"/data/cumida/Genes/Breast/GSE70947/Breast_GSE70947.arff-knn-saida.txt",
"kmeans":"/data/cumida/Genes/Breast/GSE70947/Breast_GSE70947.arff-k-means-saida.txt"
},
"manufacturer":"Agilent Technologies"
},
{
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